Python VTK计算曲面的高斯曲率和平均曲率

mport numpy as np
import vtk
from vtk.util import numpy_support
from vtkmodules.numpy_interface import dataset_adapter as dsa

def main(argv):
    colors = vtk.vtkNamedColors()
    #产生曲面
    torus = vtk.vtkSuperquadricSource()
    torus.SetCenter(0.0, 0.0, 0.0)
    torus.SetScale(1.0, 1.0, 1.0)
    torus.SetPhiResolution(64)
    torus.SetThetaResolution(64)
    torus.SetThetaRoundness(1)
    torus.SetThickness(0.5)
    torus.SetSize(0.5)
    torus.SetToroidal(1)

    # 改变观察视角
    toroid_transform = vtk.vtkTransform()
    toroid_transform.RotateX(55)

    toroid_transform_filter = vtk.vtkTransformFilter()
    toroid_transform_filter.SetInputConnection(torus.GetOutputPort())
    toroid_transform_filter.SetTransform(toroid_transform)

    # The quadric is made of strips, so pass it through a triangle filter as
    # the curvature filter only operates on polys
    tri = vtk.vtkTriangleFilter()
    tri.SetInputConnection(toroid_transform_filter.GetOutputPort())

    #二次曲面在生成边的方式上存在严重的不连续性，因此让我们将其通过CleanPolyDataFilter并合并
    #任何重合或非常接近的点

    cleaner = vtk.vtkCleanPolyData()
    cleaner.SetInputConnection(tri.GetOutputPort())
    cleaner.SetTolerance(0.005)
    cleaner.Update()

    # 生成覆盖随机放置的山丘的曲面
    rh = vtk.vtkParametricRandomHills()
    rh_fn_src = vtk.vtkParametricFunctionSource()
    rh_fn_src.SetParametricFunction(rh)
    rh_fn_src.Update()

    sources = list()
    for i in range(0, 4):
        cc = vtk.vtkCurvatures()
        if i < 2:
            cc.SetInputConnection(cleaner.GetOutputPort())
        else:
            cc.SetInputConnection(rh_fn_src.GetOutputPort())
        if i % 2 == 0:
            cc.SetCurvatureTypeToGaussian()
            curvature_name = 'Gauss_Curvature'
        else:
            cc.SetCurvatureTypeToMean()
            curvature_name = 'Mean_Curvature'
        cc.Update()
        adjust_edge_curvatures(cc.GetOutput(), curvature_name)
        sources.append(cc.GetOutput())

    curvatures = {
        0: 'Gauss_Curvature',
        1: 'Mean_Curvature',
        2: 'Gauss_Curvature',
        3: 'Mean_Curvature',
    }

    # lut = get_diverging_lut()
    lut = get_diverging_lut1()

    renderers = list()
    mappers = list()
    actors = list()
    text_mappers = list()
    text_actors = list()
    scalar_bars = list()

    # Create a common text property.
    text_property = vtk.vtkTextProperty()
    text_property.SetFontSize(24)
    text_property.SetJustificationToCentered()

    # RenderWindow Dimensions
    #
    renderer_size = 512
    grid_dimensions = 2
    window_width = renderer_size * grid_dimensions
    window_height = renderer_size * grid_dimensions

 
    for idx, source in enumerate(sources):
        curvature_name = curvatures[idx].replace('_', '\n')

        source.GetPointData().SetActiveScalars(curvatures[idx])
        scalar_range = source.GetPointData().GetScalars(curvatures[idx]).GetRange()

        mappers.append(vtk.vtkPolyDataMapper())
        mappers[idx].SetInputData(source)
        mappers[idx].SetScalarModeToUsePointFieldData()
        mappers[idx].SelectColorArray(curvatures[idx])
        mappers[idx].SetScalarRange(scalar_range)
        mappers[idx].SetLookupTable(lut)

        actors.append(vtk.vtkActor())
        actors[idx].SetMapper(mappers[idx])

        text_mappers.append(vtk.vtkTextMapper())
        text_mappers[idx].SetInput(curvature_name)
        text_mappers[idx].SetTextProperty(text_property)

        text_actors.append(vtk.vtkActor2D())
        text_actors[idx].SetMapper(text_mappers[idx])
        text_actors[idx].SetPosition(250, 16)

        # Create a scalar bar
        scalar_bars.append(vtk.vtkScalarBarActor())
        scalar_bars[idx].SetLookupTable(mappers[idx].GetLookupTable())
        scalar_bars[idx].SetTitle(curvature_name)
        scalar_bars[idx].UnconstrainedFontSizeOn()
        scalar_bars[idx].SetNumberOfLabels(5)
        scalar_bars[idx].SetMaximumWidthInPixels(window_width // 8)
        scalar_bars[idx].SetMaximumHeightInPixels(window_height // 3)
        scalar_bars[idx].SetBarRatio(scalar_bars[idx].GetBarRatio() * 0.5)
        scalar_bars[idx].SetPosition(0.85, 0.1)

        renderers.append(vtk.vtkRenderer())

    for idx in range(len(sources)):
        if idx < grid_dimensions * grid_dimensions:
            renderers.append(vtk.vtkRenderer)

    # Create the RenderWindow
    #
    render_window = vtk.vtkRenderWindow()
    render_window.SetSize(renderer_size * grid_dimensions, renderer_size * grid_dimensions)
    render_window.SetWindowName('CurvaturesDemo')


    viewport = list()
    for row in range(grid_dimensions):
        for col in range(grid_dimensions):
            idx = row * grid_dimensions   col

            viewport[:] = []
            viewport.append(float(col) / grid_dimensions)
            viewport.append(float(grid_dimensions - (row   1)) / grid_dimensions)
            viewport.append(float(col   1) / grid_dimensions)
            viewport.append(float(grid_dimensions - row) / grid_dimensions)

            if idx > (len(sources) - 1):
                continue

            renderers[idx].SetViewport(viewport)
            render_window.AddRenderer(renderers[idx])

            renderers[idx].AddActor(actors[idx])
            renderers[idx].AddActor(text_actors[idx])
            renderers[idx].AddActor(scalar_bars[idx])
            renderers[idx].SetBackground(colors.GetColor3d('SlateGray'))

    interactor = vtk.vtkRenderWindowInteractor()
    interactor.SetRenderWindow(render_window)
    style = vtk.vtkInteractorStyleTrackballCamera()
    interactor.SetInteractorStyle(style)

    render_window.Render()

    interactor.Start()


def get_diverging_lut():

    ctf = vtk.vtkColorTransferFunction()
    ctf.SetColorSpaceToDiverging()
    # Cool to warm.
    ctf.AddRGBPoint(0.0, 0.230, 0.299, 0.754)
    ctf.AddRGBPoint(0.5, 0.865, 0.865, 0.865)
    ctf.AddRGBPoint(1.0, 0.706, 0.016, 0.150)

    table_size = 256
    lut = vtk.vtkLookupTable()
    lut.SetNumberOfTableValues(table_size)
    lut.Build()

    for i in range(0, table_size):
        rgba = list(ctf.GetColor(float(i) / table_size))
        rgba.append(1)
        lut.SetTableValue(i, rgba)

    return lut


def get_diverging_lut1():
    colors = vtk.vtkNamedColors()
    # Colour transfer function.
    ctf = vtk.vtkColorTransferFunction()
    ctf.SetColorSpaceToDiverging()
    p1 = [0.0]   list(colors.GetColor3d('MidnightBlue'))
    p2 = [0.5]   list(colors.GetColor3d('Gainsboro'))
    p3 = [1.0]   list(colors.GetColor3d('DarkOrange'))
    ctf.AddRGBPoint(*p1)
    ctf.AddRGBPoint(*p2)
    ctf.AddRGBPoint(*p3)

    table_size = 256
    lut = vtk.vtkLookupTable()
    lut.SetNumberOfTableValues(table_size)
    lut.Build()

    for i in range(0, table_size):
        rgba = list(ctf.GetColor(float(i) / table_size))
        rgba.append(1)
        lut.SetTableValue(i, rgba)

    return lut


def vtk_version_ok(major, minor, build):

    requested_version = (100 * int(major)   int(minor)) * 100000000   int(build)
    ver = vtk.vtkVersion()
    actual_version = (100 * ver.GetVTKMajorVersion()   ver.GetVTKMinorVersion()) \
                     * 100000000   ver.GetVTKBuildVersion()
    if actual_version >= requested_version:
        return True
    else:
        return False


def adjust_edge_curvatures(source, curvature_name, epsilon=1.0e-08):

    def point_neighbourhood(pt_id):

        cell_ids = vtk.vtkIdList()
        source.GetPointCells(pt_id, cell_ids)
        neighbour = set()
        for cell_idx in range(0, cell_ids.GetNumberOfIds()):
            cell_id = cell_ids.GetId(cell_idx)
            cell_point_ids = vtk.vtkIdList()
            source.GetCellPoints(cell_id, cell_point_ids)
            for cell_pt_idx in range(0, cell_point_ids.GetNumberOfIds()):
                neighbour.add(cell_point_ids.GetId(cell_pt_idx))
        return neighbour

    def compute_distance(pt_id_a, pt_id_b):
       
        #计算距离.


        pt_a = np.array(source.GetPoint(pt_id_a))
        pt_b = np.array(source.GetPoint(pt_id_b))
        return np.linalg.norm(pt_a - pt_b)

    # 获取活动标量
    source.GetPointData().SetActiveScalars(curvature_name)
    np_source = dsa.WrapDataObject(source)
    curvatures = np_source.PointData[curvature_name]

    #  获得边缘点的ID
    array_name = 'ids'
    id_filter = vtk.vtkIdFilter()
    id_filter.SetInputData(source)
    id_filter.SetPointIds(True)
    id_filter.SetCellIds(False)
    id_filter.SetPointIdsArrayName(array_name)
    id_filter.SetCellIdsArrayName(array_name)
    id_filter.Update()

    edges = vtk.vtkFeatureEdges()
    edges.SetInputConnection(id_filter.GetOutputPort())
    edges.BoundaryEdgesOn()
    edges.ManifoldEdgesOff()
    edges.NonManifoldEdgesOff()
    edges.FeatureEdgesOff()
    edges.Update()

    edge_array = edges.GetOutput().GetPointData().GetArray(array_name)
    boundary_ids = []
    for i in range(edges.GetOutput().GetNumberOfPoints()):
        boundary_ids.append(edge_array.GetValue(i))
    # Remove duplicate Ids.
    p_ids_set = set(boundary_ids)

    #迭代边缘点并计算曲率作为相邻点的加权平均值。
    count_invalid = 0
    for p_id in boundary_ids:
        p_ids_neighbors = point_neighbourhood(p_id)
        # Keep only interior points.
        p_ids_neighbors -= p_ids_set
        # Compute distances and extract curvature values.
        curvs = [curvatures[p_id_n] for p_id_n in p_ids_neighbors]
        dists = [compute_distance(p_id_n, p_id) for p_id_n in p_ids_neighbors]
        curvs = np.array(curvs)
        dists = np.array(dists)
        curvs = curvs[dists > 0]
        dists = dists[dists > 0]
        if len(curvs) > 0:
            weights = 1 / np.array(dists)
            weights /= weights.sum()
            new_curv = np.dot(curvs, weights)
        else:
            # Corner case.
            count_invalid  = 1
            # Assuming the curvature of the point is planar.
            new_curv = 0.0
        # Set the new curvature value.
        curvatures[p_id] = new_curv

    #  将小值设置为0
    if epsilon != 0.0:
        curvatures = np.where(abs(curvatures) < epsilon, 0, curvatures)
        # Curvatures is now an ndarray
        curv = numpy_support.numpy_to_vtk(num_array=curvatures.ravel(),
                                          deep=True,
                                          array_type=vtk.VTK_DOUBLE)
        curv.SetName(curvature_name)
        source.GetPointData().RemoveArray(curvature_name)
        source.GetPointData().AddArray(curv)
        source.GetPointData().SetActiveScalars(curvature_name)


if __name__ == '__main__':
    import sys

    main(sys.argv)